Fungi New Run vs Old Run

Input

Total: 446k Fungi Fasta File
Sample Data: first 100k sequences,.
OutSample Data: rest 346k sequences
Input Cluster Information: 7 Regions after Region Refinement from Old Run

Description

Aligner: SmithWaterman
OpenGapPentalty: -16
GapExtensionPenalty: -4
WithReverseCompliment: No
ScoringMatrix: EDNAFULL

Region Refinement Configuration

Lowest level: 0
Maximum Points: 200
Minimum Points: 0
Region 7 starting Point: 85147
Extend Region 7 by 0.01 to Region 1
Extend Region 7 by 0.025 to Region 3
From Plot, Region 7 is created from old Region 3

Summary

Before Region Refinement
	In Old and New	In Old NOT New	In New NOT Old	Old Total	New Total
0	109035	2194	14780	111229	123815
1	42711	7524	7054	50235	49765
2	112379	2244	12231	114623	124610
3	41662	512	7541	42174	49203
4	34304	39581	361	73885	34665
5	36386	2057	5135	38443	41521
6	12940	2512	9522	15452	22462
7	0	0	0	0	0
After Region Refinement
	In Old and New	In Old NOT New	In New NOT Old	Old Total	New Total
0	109158	2071	16640	111229	125798
1	40634	9601	6405	50235	47039
2	112163	2460	12046	114623	124209
3	34480	7694	4732	42174	39212
4	34315	39570	446	73885	34761
5	36399	2044	5471	38443	41870
6	12967	2485	9745	15452	22712
7	0	0	10440	0	10440